Datasheet: Live Single Cell Functional Analysis with Beacon Discovery™
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Cell Line Development Application

The New Standard for
Speed, Monoclonality,
and Quality

OVERVIEW

Shorten the Path to Cell Line Development

Current technologies utilized to screen clones for cell line development impact the risk level throughout a cell line development campaign. Biologics pipelines are producing increasingly complex molecules that require more sophisticated measurements, and CHO cell line selection is a painful bottleneck in biotherapeutic development, particularly for complex molecules like bispecifics. ​

The Beacon platform accelerates cell line development while alleviating these challenges by offering rapid cloning, screening, and selection of CHO cell lines. Widely used by top pharmaceutical firms and CDMOs, these systems enhance workflow efficiency, allowing 4X faster throughput and cutting the development time in half while ensuring >99% monoclonality for FDA filings and higher titer clones. Additionally, the Opto® Assure assays for cell line development on the Beacon platform quickly identify quality clones, reducing costs and improving success rates during the scale up process.

Cell Line Development Application

Confident results in less time

The Most Advanced Platform for Cell Line Development

Continual advancements in optofluidics, imaging, and functional screening assays have transformed the Beacon platform into the industry’s most advanced CLD system. It delivers true multi-functionality, integrating single‑cell isolation with clonality assurance, functional screening for productivity, quality, and stability, and faster development timelines, all on one automated platform.

2017

BEACON FOR CLD LAUNCHED

Beacon launches integrated CLD: cloning, growth, productivity, and recovery.

2018

OPTIMIZED CLD SOFTWARE RELEASED

Assay Analyzer enhances monoclonality evidence for regulatory filings.

2019

PEER-REVIEWED >99% MONOCLONALITY PUBLISHED BY AMGEN

Amgen demonstrates >99% monoclonality assurance on Beacon.

2020

INCREASED CLONING EFFICIENCY AND SPOTLIGHT™ HUMAN KAPPA REAGENT RELEASED

Laser-assisted clone recovery launches; SpotLight™ Kappa expands the assay tool kit.

2021

INTRODUCED SUITE OF ADVANCED ASSAYS

A major assay expansion enables faster selection of healthy, productive clones with early quality and stability indicators.

2022

BISPECIFICS % HETERODIMER ASSAY LAUNCHED

The % heterodimer assay is introduced to identify high-quality bispecifics within days of cloning.

2023

SPOTLIGHT™ HUMAN LAMBDA REAGENT RELEASED

SpotLight™ Human Lambda streamlines % heterodimer assays for bispecific antibodies.

2024

MERCK PUBLISHES SUBSTANTIAL PRODUCTIVITY IMPROVEMENTS USING SELECTIVE CELL CLONING

Merck publishes higher productivity and faster timelines with Selective Cell Cloning.

2025

POPULATION DYNAMICS COMPANION KIT INTRODUCED

Population Dynamics Kit makes clone stability and bioreactor predictivity routine and cost-effective.

2026

2026 ROAD MAP

AI–Assisted Data Interaction: Bruker Cellular Analysis is developing AI-assisted clone evaluation to support
confident, data-driven selection.

2017

BEACON FOR CLD LAUNCHED

Beacon launches integrated CLD: cloning, growth, productivity, and recovery.

2018

OPTIMIZED CLD SOFTWARE RELEASED

Assay Analyzer enhances monoclonality evidence for regulatory filings.

2019

PEER-REVIEWED >99% MONOCLONALITY PUBLISHED BY AMGEN

Amgen demonstrates >99% monoclonality assurance on Beacon.

2020

INCREASED CLONING EFFICIENCY AND SPOTLIGHT™ HUMAN KAPPA REAGENT RELEASED

Laser-assisted clone recovery launches; SpotLight™ Kappa expands the assay tool kit.

2021

INTRODUCED SUITE OF ADVANCED ASSAYS

A major assay expansion enables faster selection of healthy, productive clones with early quality and stability indicators.

2022

BISPECIFICS % HETERODIMER ASSAY LAUNCHED

The % heterodimer assay is introduced to identify high-quality bispecifics within days of cloning.

2023

SPOTLIGHT™ HUMAN LAMBDA REAGENT RELEASED

SpotLight™ Human Lambda streamlines % heterodimer assays for bispecific antibodies.

2024

MERCK PUBLISHES SUBSTANTIAL PRODUCTIVITY IMPROVEMENTS USING SELECTIVE CELL CLONING

Merck publishes higher productivity and faster timelines with Selective Cell Cloning.

2025

POPULATION DYNAMICS COMPANION KIT INTRODUCED

Population Dynamics Kit makes clone stability and bioreactor predictivity routine and cost-effective.

2026

2026 ROAD MAP

AI–Assisted Data Interaction: Bruker Cellular Analysis is developing AI-assisted clone evaluation to support
confident, data-driven selection.

2017

BEACON FOR CLD LAUNCHED

Beacon launches integrated CLD: cloning, growth, productivity, and recovery.

2018

OPTIMIZED CLD SOFTWARE RELEASED

Assay Analyzer enhances monoclonality evidence for regulatory filings.

2019

PEER-REVIEWED >99% MONOCLONALITY PUBLISHED BY AMGEN

Amgen demonstrates >99% monoclonality assurance on Beacon.

2020

INCREASED CLONING EFFICIENCY AND SPOTLIGHT™ HUMAN KAPPA REAGENT RELEASED

Laser-assisted clone recovery launches; SpotLight™ Kappa expands the assay tool kit.

2021

INTRODUCED SUITE OF ADVANCED ASSAYS

A major assay expansion enables faster selection of healthy, productive clones with early quality and stability indicators.

2022

BISPECIFICS % HETERODIMER ASSAY LAUNCHED

The % heterodimer assay is introduced to identify high-quality bispecifics within days of cloning.

2023

SPOTLIGHT™ HUMAN LAMBDA REAGENT RELEASED

SpotLight™ Human Lambda streamlines % heterodimer assays for bispecific antibodies.

2024

MERCK PUBLISHES SUBSTANTIAL PRODUCTIVITY IMPROVEMENTS USING SELECTIVE CELL CLONING

Merck publishes higher productivity and faster timelines with Selective Cell Cloning.

2025

POPULATION DYNAMICS COMPANION KIT INTRODUCED

Population Dynamics Kit makes clone stability and bioreactor predictivity routine and cost-effective.

2026

2026 ROAD MAP

AI–Assisted Data Interaction: Bruker Cellular Analysis is developing AI-assisted clone evaluation to support
confident, data-driven selection.

2017

BEACON FOR CLD LAUNCHED

Beacon launches integrated CLD: cloning, growth, productivity, and recovery.

2018

OPTIMIZED CLD SOFTWARE RELEASED

Assay Analyzer enhances monoclonality evidence for regulatory filings.

2019

PEER-REVIEWED >99% MONOCLONALITY PUBLISHED BY AMGEN

Amgen demonstrates >99% monoclonality assurance on Beacon.

2020

INCREASED CLONING EFFICIENCY AND SPOTLIGHT™ HUMAN KAPPA REAGENT RELEASED

Laser-assisted clone recovery launches; SpotLight™ Kappa expands the assay tool kit.

2021

INTRODUCED SUITE OF ADVANCED ASSAYS

A major assay expansion enables faster selection of healthy, productive clones with early quality and stability indicators.

2022

BISPECIFICS % HETERODIMER ASSAY LAUNCHED

The % heterodimer assay is introduced to identify high-quality bispecifics within days of cloning.

2023

SPOTLIGHT™ HUMAN LAMBDA REAGENT RELEASED

SpotLight™ Human Lambda streamlines % heterodimer assays for bispecific antibodies.

2024

MERCK PUBLISHES SUBSTANTIAL PRODUCTIVITY IMPROVEMENTS USING SELECTIVE CELL CLONING

Merck publishes higher productivity and faster timelines with Selective Cell Cloning.

2025

POPULATION DYNAMICS COMPANION KIT INTRODUCED

Population Dynamics Kit makes clone stability and bioreactor predictivity routine and cost-effective.

2026

2026 ROAD MAP

AI–Assisted Data Interaction: Bruker Cellular Analysis is developing AI-assisted clone evaluation to support
confident, data-driven selection.

2017

BEACON FOR CLD LAUNCHED

Beacon launches integrated CLD: cloning, growth, productivity, and recovery.

2018

OPTIMIZED CLD SOFTWARE RELEASED

Assay Analyzer enhances monoclonality evidence for regulatory filings.

2019

PEER-REVIEWED >99% MONOCLONALITY PUBLISHED BY AMGEN

Amgen demonstrates >99% monoclonality assurance on Beacon.

2020

INCREASED CLONING EFFICIENCY AND SPOTLIGHT™ HUMAN KAPPA REAGENT RELEASED

Laser-assisted clone recovery launches; SpotLight™ Kappa expands the assay tool kit.

2021

INTRODUCED SUITE OF ADVANCED ASSAYS

A major assay expansion enables faster selection of healthy, productive clones with early quality and stability indicators.

2022

BISPECIFICS % HETERODIMER ASSAY LAUNCHED

The % heterodimer assay is introduced to identify high-quality bispecifics within days of cloning.

2023

SPOTLIGHT™ HUMAN LAMBDA REAGENT RELEASED

SpotLight™ Human Lambda streamlines % heterodimer assays for bispecific antibodies.

2024

MERCK PUBLISHES SUBSTANTIAL PRODUCTIVITY IMPROVEMENTS USING SELECTIVE CELL CLONING

Merck publishes higher productivity and faster timelines with Selective Cell Cloning.

2025

POPULATION DYNAMICS COMPANION KIT INTRODUCED

Population Dynamics Kit makes clone stability and bioreactor predictivity routine and cost-effective.

2026

2026 ROAD MAP

AI–Assisted Data Interaction: Bruker Cellular Analysis is developing AI-assisted clone evaluation to support
confident, data-driven selection.

Capabilities

Select the Best Clones
for Cell Line Development

Compress cell line development timelines

Reduce Timelines While Selecting More Productive Clones

The Beacon and Beacon Select optofluidic systems enable high throughput cloning, screening, and selection of top-performing CHO cell lines in just days. Replace 8-12 weeks of onerous well plate steps with Opto® cell line development on the Beacon optofluidic systems. Screen thousands of clones in parallel and select top clones for even complex molecules like bispecific antibodies and non-antibody proteins.

cell-line-development-timelines-comparison-1360

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Publication

Microfluidic chip-based single-cell cloning to accelerate biologic production timelines

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Publication

Combined approach of selective and accelerated cloning for microfluidic chip-based system increases clone specific productivity

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Webinar

Leveraging Innovative Technologies to Accelerate Biologics Development

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Thoroughly characterize clones with a vast assay portfolio

Best in Class Assays to Ensure High-Performing Clone Selection

The Beacon platform enables the rapid measurement and selection of the high-performing clones, leveraging best-in-class assay capabilities to assess monoclonality, growth, productivity, quality, and stability within weeks of single cell cloning to compress cell line development timelines.

Superior assurance of >99% monoclonality for regulatory submissions

cld-monoclonality-panel-opt

As the cells expand in the chamber microenvironment, fluorescence-based assays can be performed at multiple time points to identify clones with desired attributes​.

Productivity information at the earliest stages of cell line development

cld-productivity-panel-dark-opt

Discern producing clones with a diffuse fluorescent signal gradient during product secretion assays.

Selection based on product quality, not just productivity ​

Direct detection of insoluble product aggregates within days of single cell cloning, confidently identifying and selecting clones that develop better production cell lines faster.

fluorescent-spotlight-assay

Use Population Dynamics to predict clone stability within six weeks of single cell cloning

Leverage the Beacon instrument’s unique combination of high throughput and precise productivity assays to characterize hundreds of subclones and uncover emerging clone instabilities early in scale-up.

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App Note

Bring Product Quality Assessment into Early Clone Selection with the Opto™ Assure Aggregation Assay

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App Note

SpotLight™ Reagents to Expedite Productivity and Quality Screening in Cell Line Development Workflows

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Confidently submit IND filings to regulators

Superior End to End Monoclonality Assurance

Integrated imaging capability in combination with in-process quality controls provide superior end to end monoclonality assurance compared to microtiter plate based cloning approaches. The Beacon platform has been validated by the cell line development community and regulatory bodies, with 38% of cell line development users adopting the platform and achieving successful IND filings, and robust demonstration of >99% monoclonality with robust statistical analyses.

beacon-system-monoclonality-validation-study-table-clear

Monoclonality with the Opto cell line development workflow on the Beacon platform. During a four-week period, a total of 30 OptoSelect chips were loaded with CHO cells on two different Beacon systems, from which 650 clonal populations were selectively unloaded. An additional 2,599 blank exports were performed, and these blank wells were stained, imaged, and manually scored for growth. In total, only three contaminating colonies were identified across all blanks, yielding an average monoclonality of 99.88%.

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App Note

FDA-Accepted Monoclonality Assurance on the Beacon® Optofluidic System for Cell Line Development

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Publication

Assuring Clonality on the Beacon Digital Cell Line Development Platform

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Reproducible & convenient automated workflows

Scale Your Cell Line Development Process

The Beacon platform is a highly integrated solution for the rapid measurement and selection of clones, freeing scientists’ time while delivering robust characterization of clone performance.​

Scale Your Operation
and Drive New Business

Up to 10 times more projects per year. Millions in enabled revenue.

workflow-panel-traditional-vs-opto-cld-stacked-750-v2

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Brochure

Increase CDMO Revenue with the Opto Cell Line Development Workflow

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Datasheet

Opto® Cell Line Development Workflow on the Beacon® Platform

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Meet the Beacon Optofluidic System

The Most Advanced
Cell Line Development Platform

Rapidly Advance
High Performing Clones
into the Clinic

At the core of the Beacon system is a combination of optics and nanofluidics called optofluidics. The OptoSelect® chips replace typical well plates. Each OptoSelect chip contains thousands of NanoPen® chambers, which replace wells on a microplate. This is where cells are selectively placed, cultured and characterized using a myriad of proprietary Beacon Platform assays.

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Key Product Features

  • IND-validated monoclonality: Confidently submit to regulators with a customer-validated >99% monoclonality assurance.
  • Antibody production measurement from thousands of clones: Advance the most productive and high-quality clones to your master cell bank by leveraging the Beacon platform's unique combination of quality and productivity assays and high throughput.
  • Powerful automation: Take advantage of convenient integration to free scientists' time while delivering reproducible and detailed characterizations of clone performance.

How It Works

Understand the life of single cells through functional cellular analysis with the Beacon Platform.

  • Customized Clone Selection: Select viable clones and establish monoclonality.
  • Breadth of Functional Assays: Function-first assays enable deep characterization of a clone's productivity and product quality.
  • Compress Timelines: Measure a clone's productivity, quality, and stability in days to weeks instead of months.

Compress Cell Line Development Timelines

See how researchers leverage the Beacon platform to compress
cell line development timelines with robust performance

Researcher Spotlights

Bruker Cellular Analysis' Functional Cell Biology Has Been Published in 250+ Publications
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Beacon for Cell Line Development

Unleash the Full Potential of
Your Cell Line Development Research

Complete the form to connect with us and discover how the Beacon technology can enhance your Cell Line Development programs.

Our expert team will be able to answer your questions, show you how the Beacon system works, and share the most relevant datasheets & case studies for your research.